Gene Regulation Info

Quantitative approaches for gene regulation

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Welcome to Gene Regulation Info

This site is devoted to the quantitative description of gene regulation. It will store reviews of relevant resources (e.g. DNA-protein interactions, nucleosome positioning, histone modifications and other aspects of epigenetics to come later, aggregated gene-regulation news (right panel), lists of conferences and schools, relevant science-online links, as well as my own publications. You can contact me with any comments, suggestions and links.

 

Upcoming events

Here is a list of upcoming events -- conferences, summer schools, workshops and other meetings relevant to the quantitative gene regulation. I am regularly updating this list. Come again later and check for updates. Also feel free to submit new entries.

 

Protein-DNA binding

I have extended the collection of protein-DNA binding parameters here. In addition to thermodynamic parameters (Kd, deltaG, km, ks, etc) and the position weight matrices (PWMs), this list now includes software to calculate binding affinities from PWMs and directly from experiments. This list is being constantly updated, feel free to contact me to submit new links.

 

Nucleosome positioning

The nucleosome positioning collection has been extended and split into four sections: (i) software to analyze high-throughput data, (ii) software to predict affinities of the histone octamer to a given DNA sequence, (iii) experimental datasets, and (iv) experimental methods. his list is being constantly updated, feel free to contact me to submit new links and comments.

 

Quantitative Gene Regulation - Networking Groups

Networking groups "Quantitative Gene Regulation" are established at ResearchGate (>180 members) and LinkedIn (>40 members). Join any of them and have fun!