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Gene Regulation Info

Quantitative gene regulation

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NGS Analysis Proficio Course, June 6, 2017, University of Essex:

Task 1. Map p53. Download bash file

Task 2. Map Input. Download bash file

Task 3. Peak calling. Download bash file

Task 4. Intersect peaks. Download bash file

Task 5. Determine enrichment. Download bash file

  • Practical "RNA-seq analysis" (Antonio Marco)

Download slides part 1

Download slides part 2

Download practical instructions

Task 6. Convert RNA-seq results to BED-compatible format. Download bash file

Task 7. Merge ChIP-seq & RNA-seq data, find correlations. Download bash file

Task 8. Calculate aggregate occupancy profiles. Download bash file

Task 9. Motif analysis and GO analysis. See instructions