Gene Regulation Info

Quantitative approaches for gene regulation

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Epigenetic modifications databases

Histone and DNA post-translational modification databases:

  • HHMD - Human Histone Modification Database (data sources include ENCODE, Zhao lab and some others)
  • Zhao Lab (NIH) - Genome-wide mapping of histone H3 modifications in human CD4+ T cells:

| Methylation, H2A.Z, CTCF & Pol II occupancies (Barski et al., 2007) | Actetylation data (Wang et al., 2008)|

  • HistoneHits - phenotypes for systematic collections of histone mutants
  • MethDB - the database for DNA methylation and environmental epigenetic effects
  • EpiGRAPH - software for advanced (epi-) genome analysis and prediction
  • ChromatinDB - visualising histone modification data (last update in 2007?)
  • Also have a look here
Last Updated on Tuesday, 03 August 2010 12:23